Oliver Berkowitz

Publications

• Applications of hyperspectral imaging in plant phenotyping
• Establishment of cell transcriptional identity during seed germination
• Spatially Resolved Transcriptomic Analysis of the Germinating Barley Grain
• Noninvasive imaging technologies in plant phenotyping
• Temporal tissue‐specific regulation of transcriptomes during barley (Hordeum vulgare) seed germination
• Single Cell App: An App for Single Cell RNA-sequencing Data Visualization, Comparison and Discovery
• Transcriptional variation is associated with differences in shoot sodium accumulation in distinct barley varieties
• FTSH3 facilitates complex I degradation through a direct interaction with the complex I subunit PSST
• Spatially resolved transcriptomic analysis of the germinating barley grain
• An Ancient Peptide Family Buried within Vicilin Precursors.
• Arabidopsis DGD1 SUPPRESSOR 1 is a Subunit of the Mitochondrial Contact Site and Cristae Organizing System and Affects Mitochondrial Biogenesis.
• ANAC017 Coordinates Organellar Functions and Stress Responses by Reprogramming Retrograde Signaling.
• Mitochondrial function modulates touch signalling in Arabidopsis thaliana.
• The function of the Medicago truncatula ZIP transporter MtZIP14 is linked to arbuscular mycorrhizal fungal colonization
• Cyclic Peptides in Seed of Annona muricata Are Ribosomally Synthesized
• Laser-capture microdissection RNA-sequencing for spatial and temporal tissue-specific gene expression analysis in plants
• Emerging trends in genomic and epigenomic regulation of plant specialised metabolism
• Coordinated regulation of the mitochondrial retrograde response by circadian clock regulators and ANAC017
• scCloudMine: A cloud-based app for visualization, comparison, and exploration of single-cell transcriptomic data
• Erratum: Anac017 coordinates organellar functions and stress responses by reprogramming retrograde signaling (Plant Physiology DOI: 10.1104/pp.18.01603)
• Identification of a unique ZIP transporter involved in zinc uptake via the arbuscular mycorrhizal fungal pathway.
• Genes That Mediate Starch Metabolism in Developing and Germinated Barley Grain
• GWAS on multiple traits identifies mitochondrial ACONITASE3 as important for acclimation to submergence stress
• Developmental normalization of phenomics data generated by high throughput plant phenotyping systems
• Linking mitochondrial and chloroplast retrograde signalling in plants
• Co-regulation of mitochondrial and chloroplast function: Molecular components and mechanisms
• Cross-species transcriptomic analyses reveals common and opposite responses in Arabidopsis, rice and barley following oxidative stress and hormone treatment
• Enhanced reactive oxygen detoxification occurs in salt‐stressed soybean roots expressing GmSALT3
• The retrograde signaling regulator ANAC017 recruits the MKK9–MPK3/6, ethylene, and auxin signaling pathways to balance mitochondrial dysfunction with growth
• RNA‐seq analysis of laser microdissected Arabidopsis thaliana leaf epidermis, mesophyll and vasculature defines tissue‐specific transcriptional responses to multiple stress treatments
• FTSH PROTEASE 3 facilitates Complex I degradation through a direct interaction with the Complex I subunit PSST
• Role of aconitase in plant stress response and signaling
• Mitochondrial signalling is critical for acclimation and adaptation to flooding in Arabidopsis thaliana
• Same, yet different: towards understanding nutrient use in hemp- and drug-type Cannabis
• Sink strength, nutrient allocation, cannabinoid yield, and associated transcript profiles vary in two drug-type Cannabis chemovars
• The genetic origin of evolidine, the first cyclopeptide discovered in plants, and related orbitides
• Novel Cyclic Peptides in Seed of Annona muricata are Ribosomally Synthesized
• SPX4 Acts on PHR1-Dependent and -Independent Regulation of Shoot Phosphorus Status in Arabidopsis
• Molecular and physiological responses during thermal acclimation of leaf photosynthesis and respiration in rice
• Transcriptional and biochemical analyses of gibberellin expression and content in germinated barley grain
• The genetic origin of evolidine, the first cyclopeptide discovered in plants, and related orbitides
• Conserved and Opposite Transcriptome Patterns during Germination in Hordeum vulgare and Arabidopsis thaliana
• Knockdown of Succinate Dehydrogenase Assembly Factor 2 Induces Reactive Oxygen Species–Mediated Auxin Hypersensitivity Causing pH-Dependent Root Elongation
• GmSALT3 expression improves reactive oxygen species detoxification in salt-stressed soybean roots
• The mitochondrial AAA protease FTSH3 regulates Complex I abundance by promoting its disassembly
• Extracellular Vesicles from Fusarium graminearum Contain Protein Effectors Expressed during Infection of Corn
• Developmental Normalization of Phenomics Data Generated by High Throughput Plant Phenotyping Systems
• RNA-seq analysis of laser micro-dissected Arabidopsis thaliana leaf epidermis, mesophyll and vasculature defines tissue-specific transcriptional responses to multiple stress treatments
• Establishment of single-cell transcriptional states during seed germination
• Overexpression of the transcription factor ANAC017 results in a genomes uncoupled phenotype under lincomycin
• The cysteine synthase complex from plants
• Stress responsive mitochondrial proteins in Arabidopsis thaliana
• Characterization of TCTP, the Translationally Controlled Tumor Protein, from Arabidopsis thaliana
• Magnetic quantitative reverse transcription PCR: A high-throughput method for mRNA extraction and quantitative reverse transcription PCR
• Isolation of tissues and preservation of RNA from intact, germinated barley grain.
• RNA-Seq analysis identifies key genes associated with haustorial development in the root hemiparasite Santalum album.
• Characterization of a novel β-barrel protein (AtOM47) from the mitochondrial outer membrane of Arabidopsis thaliana.
• Plant-Specific Preprotein and Amino Acid Transporter Proteins Are Required for tRNA Import into Mitochondria.
• Stepwise Evolution of a Buried Inhibitor Peptide over 45 My.
• Magnetic quantitative reverse transcription PCR: a high-throughput method for mRNA extraction and quantitative reverse transcription PCR.
• Evidence for Ancient Origins of Bowman-Birk Inhibitors from Selaginella moellendorffii
• Root Cell-Specific Regulators of Phosphate-Dependent Growth
• Subcellular localization and tissue specific expression of amidase 1 from Arabidopsis thaliana
• Accumulation of endogenous peptides triggers a pathogen stress response in Arabidopsis thaliana.
• Direct comparison of Arabidopsis gene expression reveals different responses to melatonin versus auxin
• A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch
• Biochemical Characterization of Two Wheat Phosphoethanolamine N-Methyltransferase Isoforms with Different Sensitivities to Inhibition by Phosphatidic Acid
• Genomic and functional characterization of the oas gene family encoding O-acetylserine (thiol) lyases, enzymes catalyzing the final step in cysteine biosynthesis in Arabidopsis thaliana
• A metal-binding member of the late embryogenesis abundant protein family transports iron in the phloem of Ricinus communis L.
• Acclimation responses of Arabidopsis thaliana to sustained phosphite treatments
• The jasmonic acid signaling pathway is linked to auxin homeostasis through the modulation of YUCCA8 and YUCCA9 gene expression
• An enzymatic fluorescent assay for the quantification of phosphite in a microtiter plate format
• Characterization and expression analysis of a serine acetyltransferase gene family involved in a key step of the sulfur assimilation pathway in Arabidopsis
• Molecular and biochemical analysis of the enzymes of cysteine biosynthesis in the plant Arabidopsis thaliana
• Use of biomolecular interaction analysis to elucidate the regulatory mechanism of the cysteine synthase complex from Arabidopsis thaliana
• Next generation sequencing and de novo transcriptomics to study gene evolution
• Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans
• Plant perception of beta-aminobutyric acid is mediated by an aspartyl-tRNA synthetase.
• RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin
• Root architecture responses: in search for phosphate
• Phosphorus nutrition of phosphorus-sensitive Australian native plants: threats to plant communities in a global biodiversity hotspot
• Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite
• Inactivation of Mitochondrial Complex I Induces the Expression of a Twin Cysteine Protein that Targets and Affects Cytosolic, Chloroplastidic and Mitochondrial Function
• Interaction between hormonal and mitochondrial signalling during growth, development and in plant defence responses
• The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a
• Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (Oryza sativa)
• Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis
• NMT1 and NMT3 N-Methyltransferase Activity Is Critical to Lipid Homeostasis, Morphogenesis, and Reproduction
• Onset and maintenance of plant immune priming