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Vesiclepedia 2019: a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles

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posted on 2023-05-05, 04:16 authored by Mohashin Pathan, Pamali FonsekaPamali Fonseka, Sai Vara Prasad ChittiSai Vara Prasad Chitti, Taeyoung KangTaeyoung Kang, Rahul SanwlaniRahul Sanwlani, Jan Van Deun, An Hendrix, Suresh MathivananSuresh Mathivanan
Extracellular vesicles (EVs) are membranous vesicles that are released by both prokaryotic and eukaryotic cells into the extracellular microenvironment. EVs can be categorised as exosomes, ectosomes or shedding microvesicles and apoptotic bodies based on the mode of biogenesis. EVs contain biologically active cargo of nucleic acids, proteins, lipids and metabolites that can be altered based on the precise state of the cell. Vesiclepedia (http://www.microvesicles.org) is a web-based compendium of RNA, proteins, lipids and metabolites that are identified in EVs from both published and unpublished studies. Currently, Vesiclepedia contains data obtained from 1254 EV studies, 38 146 RNA entries, 349 988 protein entries and 639 lipid/metabolite entries. Vesiclepedia is publicly available and allows users to query and download EV cargo based on different search criteria. The mode of EV isolation and characterization, the biophysical and molecular properties and EV-METRIC are listed in the database aiding biomedical scientists in assessing the quality of the EV preparation and the corresponding data obtained. In addition, FunRich-based Vesiclepedia plugin is incorporated aiding users in data analysis.

Funding

Australian Research Council DP [DP170102312 to S.M.]; Australian Research Council FT [FT180100333] and NHMRC project grant [1122437]. Funding for open access charge: Australian Research Council DP [DP170102312 to S.M.]; Australian Research Council FT [FT180100333];

History

Publication Date

2019-01-08

Journal

Nucleic Acids Research

Volume

47

Issue

D1

Article Number

Database-Issue

Pagination

4p. (p. D516-D519)

Publisher

Oxford University Press

ISSN

0305-1048

Rights Statement

© The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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