The genome of the Black Bengal goat (Capra hircus)

Siddiki, AZ; Baten, A; Billah, M; Alam, MAU; Shawrob, KSM; Saha, S; Chowdhury, M; Rahman, AH; Stear, Michael; Miah, G; Kumkum, M; Islam, MS; Hossain, MA; Mollah, AKMM; Khan, MKI

doi:10.26181/17205887.v1

581290_Siddiki,A_2019.pdf (617.47 kB)

The genome of the Black Bengal goat (Capra hircus)

journal contribution

posted on 2022-01-21, 04:01 authored by AZ Siddiki, A Baten, M Billah, MAU Alam, KSM Shawrob, S Saha, M Chowdhury, AH Rahman, Michael StearMichael Stear, G Miah, M Kumkum, MS Islam, MA Hossain, AKMM Mollah, MKI Khan

Objectives: Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh. Furthermore, the aptitude of adaptation and disease resistance capacity of it is highly notable which makes its whole genome information an area of research interest. Data description: The genomic DNA of a local (Chattogram, Bangladesh) healthy male Black Bengal goat (Capra hircus) was extracted and then sequenced. Sequencing was completed using the Illumina HiSeq 2500 sequencing platform and the draft assembly was generated using the "ARS1" genome as the reference. MAKER gene annotation pipeline was utilized to annotate 26,458 gene models. Genome completeness was assessed using BUSCO (Benchmarking Universal Single-Copy Orthologs) which showed 82.5% completeness of the assembled genome.

Funding

This study is supported by funding from Chattogram Veterinary and Animal Sciences University (CVASU). CVASU is the only veterinary university of Bangladesh and Black Bengal goat is important livestock. The funding authority initiated the project to construct the genome and identify the specific traitrelated genes.

History

Publication Date

2019-01-01

Journal

BMC Research Notes

Volume

12

Issue

1

Article Number

362

Pagination

3p.

Publisher

Springer Nature

ISSN

1756-0500

Rights Statement

© The Author(s) 2019. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creat iveco mmons .org/licen ses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creat iveco mmons .org/ publi cdoma in/zero/1.0/) applies to the data made available in this article, unless otherwise stated.