The alarming rise in superbugs that are resistant to drugs of last resort, including vancomycin-resistant enterococci and staphylococci, has become a significant global health hazard. Here, we report the click chemistry synthesis of an unprecedented class of shapeshifting vancomycin dimers (SVDs) that display potent activity against bacteria that are resistant to the parent drug, including the ESKAPE pathogens, vancomycin-resistant Enterococcus (VRE), methicillin-resistant Staphylococcus aureus (MRSA), as well as vancomycin-resistant S. aureus (VRSA). The shapeshifting modality of the dimers is powered by a triazole-linked bullvalene core, exploiting the dynamic covalent rearrangements of the fluxional carbon cage and creating ligands with the capacity to inhibit bacterial cell wall biosynthesis. The new shapeshifting antibiotics are not disadvantaged by the common mechanism of vancomycin resistance resulting from the alteration of the C-terminal dipeptide with the corresponding d-Ala-d-Lac depsipeptide. Further, evidence suggests that the shapeshifting ligands destabilize the complex formed between the flippase MurJ and lipid II, implying the potential for a new mode of action for polyvalent glycopeptides. The SVDs show little propensity for acquired resistance by enterococci, suggesting that this new class of shapeshifting antibiotic will display durable antimicrobial activity not prone to rapidly acquired clinical resistance.
Funding
We thank Cold Spring Harbor Laboratory for developmental funds from the National Cancer Institute Cancer Center Support Grant 5P30CA045508 (J.E.M.). We thank the Australian Research Council for funding (J.E.M.) (Future Fellowship; FT170100156) (T.P.S.d.C.) (DECRA Fellowship; DE190100806). We thank the National Health and Medical Research Council of Australia (T.P.S.d.C.) (APP1091976). We thank the New Zealand Marsden Fund (T.F.) (Fast Start Grant; 15-MAU-154). J.E.M. is financially supported by The Empire State Development Biodefense Commercialization Fund. C.V.R's laboratory is supported by a Medical Research Council program grant (MR/V028839/1) awarded to C.V.R. and J.R.B.J.R.B. holds a Royal Society University Research Fellowship (URF1 R11211567). P.W. acknowledges the support of a Medical Research Council U.K. Programme Grant (MR/N010477/1). J.A.W. is supported by the Defence Science Institute, an initiative of the State Government of Victoria, and is the recipient of a Research Training Program scholarship.
History
Publication Date
2023-04-03
Journal
Proceedings of the National Academy of Sciences of the United States of America