La Trobe

File(s) under permanent embargo

EVpedia: a community web portal for extracellular vesicles research.

journal contribution
posted on 2021-03-12, 06:58 authored by D Kim, J Lee, S Kim, D Choi, Y Yoon, J Kim, G Go, D Nhung, K Hong, S Jang, K Park, O Kim, H Park, J Seo, E Aikawa, M Baj-Krzyworzeka, B van, M Belting, L Blanc, V Bond, A Bongiovanni, F Borras, L Buee, E Buzas, Lesley SimLesley Sim, A Clayton, E Cocucci, C Dela, D Desiderio, V Di, K Ekstrom, J Falcon-Perez, C Gardiner, B Giebel, David GreeningDavid Greening, J Gross, D Gupta, A Hendrix, Andrew HillAndrew Hill, M Hill, E Hoen, D Hwang, J Inal, M Jagannadham, M Jayachandran, Y Jee, M Jorgensen, K Kim, Y Kim, T Kislinger, C Lasser, D Lee, H Lee, L van, T Lener, M Liu, J Lotvall, A Marcilla, Suresh MathivananSuresh Mathivanan, A Moeller, J Morhayim, F Mullier, I Nazarenko, R Nieuwland, D Nunes, K Pang, J Park, T Patel, G Pocsfalvi, P del, U Putz, M Ramirez, M Rodrigues, T Roh, F Royo, S Sahoo, R Schiffelers, S Sharma, P Siljander, Richard SimpsonRichard Simpson, C Soekmadji, P Stahl, A Stensballe, E Stepien, H Tahara, A Trummer, H Valadi, L Vella, S Wai, K Witwer, M Yanez-Mo, H Youn, R Zeidler, Y Gho
© The Author 2014. Published by Oxford University Press. All rights reserved. Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for EV-related publications and vesicular components are currently challenging. Results: We present an improved version of EVpedia, a public database for EVs research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools and a personalized function. EVpedia includes 6879 publications, 172 080 vesicular components from 263 high-throughput datasets, and has been accessed more than 65 000 times from more than 750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of EV research. Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.

History

Publication Date

2014-01-01

Journal

Bioinformatics

Volume

31

Issue

6

Article Number

6

Pagination

7p. (p. 933-939)

Publisher

Oxford University Press (OUP): Policy B - Oxford Open Option B

ISSN

1367-4803

Rights Statement

The Author reserves all moral rights over the deposited text and must be credited if any re-use occurs. Documents deposited in OPAL are the Open Access versions of outputs published elsewhere. Changes resulting from the publishing process may therefore not be reflected in this document. The final published version may be obtained via the publisher’s DOI. Please note that additional copyright and access restrictions may apply to the published version.

Publisher DOI

Usage metrics

    Journal Articles

    Categories

    Keywords

    Science & TechnologyLife Sciences & BiomedicineTechnologyPhysical SciencesBiochemical Research MethodsBiotechnology & Applied MicrobiologyComputer Science, Interdisciplinary ApplicationsMathematical & Computational BiologyStatistics & ProbabilityBiochemistry & Molecular BiologyComputer ScienceMathematicsMEMBRANE-VESICLESPROTEOMIC ANALYSISEXOSOMESPROTEINMICROPARTICLESDELIVERYCELLSEXPRESSIONLIPIDOMICSBIOMARKERExtracellular SpaceHumansComputational BiologyBiomedical ResearchSoftwareDatabase Management SystemsUser-Computer InterfaceDatabases, FactualExosomesBioinformatics

    Licence

    CC BY 4.0

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC